In the simplest form . If you add a .250 crank the original rod and piston will stick out the cylinder .250 further.
The cure for that is use a shorter rod , that's not a good option as its too short already.
option two is mill .250 off the piston , that's a lot and likely won't be any piston crown left .
Next is a different piston with the wrist pin moved up toward the piston top. usually in combination with a billet rod and possibly milling some off the piston as well .
Also you can weld a block extension on along with a new sleeve and all the above mods.
The use of less stroke will give some different options .
You might be able to mill .080 off a dished piston.
Take an old one saw it in half with a hacksaw to see how thick the crown is .
The kit method while easier still requires some checking of different things.